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comparison ideas.xml @ 139:84c909b549a9 draft

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Uploaded
author greg
date Tue, 19 Dec 2017 12:29:20 -0500
parents 8a10282ce217
children a976dd6fcd1b
comparison
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138:8a10282ce217 139:84c909b549a9
45 -c $reads_per_bp 45 -c $reads_per_bp
46 #if str($blacklist_input) not in ["None", ""]: 46 #if str($blacklist_input) not in ["None", ""]:
47 -exclude '$blacklist_input' 47 -exclude '$blacklist_input'
48 #end if 48 #end if
49 $norm 49 $norm
50 &>prepmat.log; 50 &>prepmat_log.txt;
51 if [[ $? -ne 0 ]]; then 51 if [[ $? -ne 0 ]]; then
52 cp prepmat.log '$output_txt_dir'; 52 cp prepmat_log.txt '$output_txt_dir';
53 exit 1; 53 exit 1;
54 fi 54 fi
55 ############################################## 55 ##############################################
56 ## Coerce the prepMat config output to the 56 ## Coerce the prepMat config output to the
57 ## format expected by IDEAS. 57 ## format expected by IDEAS.