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comparison ideas.xml @ 53:7d5b11f4d00d draft

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Uploaded
author greg
date Wed, 23 Aug 2017 14:29:25 -0400
parents 16d0d585412c
children 7abcf1870e39
comparison
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52:16d0d585412c 53:7d5b11f4d00d
27 #else: 27 #else:
28 #set prep_input_config = '$manual_prep_input_config' 28 #set prep_input_config = '$manual_prep_input_config'
29 #end if 29 #end if
30 #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond 30 #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
31 #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window 31 #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
32 cp $prep_input_config "prep_input_config.txt" &&
32 prepMat 33 prepMat
33 #if str($specify_genomic_window) == 'yes': 34 #if str($specify_genomic_window) == 'yes':
34 -bed '$specify_genomic_window_cond.bed_input' 35 -bed '$specify_genomic_window_cond.bed_input'
35 #else: 36 #else:
36 -gsz '$chromInfo' 37 -gsz '$chromInfo'