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comparison ideas.xml @ 177:606d6d833a85 draft

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Uploaded
author greg
date Thu, 25 Jan 2018 13:42:09 -0500
parents e0d5669fee03
children 12168e1e4859
comparison
equal deleted inserted replaced
176:e0d5669fee03 177:606d6d833a85
19 #else: 19 #else:
20 #set chrom_bed_input = $os.path.join($input.extra_files_path, $input.metadata.chrom_bed) 20 #set chrom_bed_input = $os.path.join($input.extra_files_path, $input.metadata.chrom_bed)
21 end if 21 end if
22 22
23 ## Link chromosome_windows.txt if not None. 23 ## Link chromosome_windows.txt if not None.
24 #set chromosome_windows $input.metadata.chrom_windows 24 #set chromosome_windows = $input.metadata.chrom_windows
25 #if chromosome_windows is not None: 25 #if chromosome_windows is not None:
26 #set from_path = $os.path.join($input.extra_files_path, $chromosome_windows) 26 #set from_path = $os.path.join($input.extra_files_path, $chromosome_windows)
27 ln -s $from_path . && 27 ln -s $from_path . &&
28 #end if 28 #end if
29 29
30 ## Link IDEAS_input_config.txt which will always exist. 30 ## Link IDEAS_input_config.txt which will always exist.
31 #set ideas_input_config $input.metadata.input_config 31 #set ideas_input_config = $input.metadata.input_config
32 #set from_path = $os.path.join($input.extra_files_path, $ideas_input_config) 32 #set from_path = $os.path.join($input.extra_files_path, $ideas_input_config)
33 ln -s $from_path . && 33 ln -s $from_path . &&
34 34
35 ## Link all files in the extra_files_path's tmp directory. 35 ## Link all files in the extra_files_path's tmp directory.
36 #set tmp_dir = "tmp" 36 #set tmp_dir = "tmp"