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comparison ideas.xml @ 68:5fb237a06499 draft

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Uploaded
author greg
date Thu, 24 Aug 2017 08:08:26 -0400
parents 0f186cb552c8
children 06698231cd52
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67:0f186cb552c8 68:5fb237a06499
118 <param name="input_type" type="select" label="Select input type"> 118 <param name="input_type" type="select" label="Select input type">
119 <option value="datasets" selected="true">Bam, BigWig files</option> 119 <option value="datasets" selected="true">Bam, BigWig files</option>
120 <option value="data_matrix">Data matrix</option> 120 <option value="data_matrix">Data matrix</option>
121 </param> 121 </param>
122 <when value="datasets"> 122 <when value="datasets">
123 <repeat name="input_repeat" title="Cell type, Epigenetic factor and Input" min="1"> 123 <conditional name="cell_type_epigenetic_factor_cond">
124 <param name="cell_type_name" type="text" value="" label="Cell type name"> 124 <param name="cell_type_epigenetic_factor" type="select" label="Set cell type and epigenetic factor names by">
125 <validator type="empty_field"/> 125 <option value="extract" selected="true">extracting them from the selected input file names</option>
126 <option value="manual">manually setting them for each selected input</option>
126 </param> 127 </param>
127 <param name="epigenetic_factor_name" type="text" value="" label="Epigenetic factor name"> 128 <when value="extract">
128 <validator type="empty_field"/> 129 <param name="input" type="data" format="bigwig,bam" multiple="True" label="BAM or BigWig file">
129 </param> 130 <validator type="empty_field"/>
130 <param name="input" type="data" format="bigwig,bam" label="BAM or BigWig file"> 131 <validator type="unspecified_build"/>
131 <validator type="empty_field"/> 132 </param>
132 <validator type="unspecified_build"/> 133 <param name="input_name_positions" type="select" display="radio" label="Selected input file name pattern is" help="A '-' character must separate cell type and epigenetic factor names within the selected input file names">
133 </param> 134 <option value="cell_first" selected="true">Cell type name - Epigenetic factor name</option>
134 </repeat> 135 <option value="cell_last">Epigenetic factor name - Cell type name</option>
136 </param>
137 </when>
138 <when value="manual">
139 <repeat name="input_repeat" title="Cell type, Epigenetic factor and Input" min="1">
140 <param name="cell_type_name" type="text" value="" label="Cell type name">
141 <validator type="empty_field"/>
142 </param>
143 <param name="epigenetic_factor_name" type="text" value="" label="Epigenetic factor name">
144 <validator type="empty_field"/>
145 </param>
146 <param name="input" type="data" format="bigwig,bam" label="BAM or BigWig file">
147 <validator type="empty_field"/>
148 <validator type="unspecified_build"/>
149 </param>
150 </repeat>
151 </when>
152 </conditional>
135 <conditional name="specify_genomic_window_cond"> 153 <conditional name="specify_genomic_window_cond">
136 <param name="specify_genomic_window" type="select" label="Select Bed file that defines genomic windows on which to process the data"> 154 <param name="specify_genomic_window" type="select" label="Select Bed file that defines genomic windows on which to process the data">
137 <option value="no" selected="true">No</option> 155 <option value="no" selected="true">No</option>
138 <option value="yes">Yes</option> 156 <option value="yes">Yes</option>
139 </param> 157 </param>