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comparison ideas.xml @ 5:4b0f64ae5923 draft

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Uploaded
author greg
date Thu, 10 Aug 2017 12:41:43 -0400
parents 445bafcf9a4b
children 8c6de654737b
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4:445bafcf9a4b 5:4b0f64ae5923
51 #end if 51 #end if
52 ############################################## 52 ##############################################
53 ## Build the R matrix from the prepMat output 53 ## Build the R matrix from the prepMat output
54 ############################################## 54 ##############################################
55 #set r_matrix_input = None 55 #set r_matrix_input = None
56 #for f in $os.listdir(tmp): 56 #for f in $os.listdir('tmp'):
57 #if f.endswith('.bed.gz'): 57 #if f.endswith('.bed.gz'):
58 #set r_matrix_input = $os.path.join(tmp, f) 58 #set r_matrix_input = $os.path.join('tmp', f)
59 #end if 59 #end if
60 #end for 60 #end for
61 #assert $r_matrix_input is not None and $os.path.getsize($r_matrix_input) > 0, "Output file from prepMat is missing or empty." 61 #assert $r_matrix_input is not None and $os.path.getsize($r_matrix_input) > 0, "Output file from prepMat is missing or empty."
62 && Rscript '$__tool_directory__/build_matrix.R' 62 && Rscript '$__tool_directory__/build_matrix.R'
63 -i $r_matrix_input 63 -i $r_matrix_input