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comparison ideas.xml @ 71:4afd642aa3ce draft

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Uploaded
author greg
date Thu, 24 Aug 2017 08:18:38 -0400
parents f2aaf4b141af
children 6dece3e06a10
comparison
equal deleted inserted replaced
70:f2aaf4b141af 71:4afd642aa3ce
107 && mv ./*.para $output_para 107 && mv ./*.para $output_para
108 && mv ./*.profile $output_profile 108 && mv ./*.profile $output_profile
109 && mv ./*.state $output_state 109 && mv ./*.state $output_state
110 ]]></command> 110 ]]></command>
111 <configfiles> 111 <configfiles>
112 <configfile name="prep_input_config"><![CDATA[#for $input_items in $input_type_cond.cell_type_epigenetic_factor_cond.input_repeat: 112 <configfile name="prep_input_config"><![CDATA[
113 #if $input_type_cond == "datasets" and $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "manual":
114 #for $input_items in $input_type_cond.cell_type_epigenetic_factor_cond.input_repeat:
113 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input} 115 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input}
114 #end for ]]></configfile> 116 #end for
117 #end if]]></configfile>
115 </configfiles> 118 </configfiles>
116 <inputs> 119 <inputs>
117 <conditional name="input_type_cond"> 120 <conditional name="input_type_cond">
118 <param name="input_type" type="select" label="Select input type"> 121 <param name="input_type" type="select" label="Select input type">
119 <option value="datasets" selected="true">Bam, BigWig files</option> 122 <option value="datasets" selected="true">Bam, BigWig files</option>
120 <option value="data_matrix">Data matrix</option> 123 <option value="data_matrix">Data matrix</option>
121 </param> 124 </param>
122 <when value="datasets"> 125 <when value="datasets">
123 <conditional name="cell_type_epigenetic_factor_cond"> 126 <conditional name="cell_type_epigenetic_factor_cond">
124 <param name="cell_type_epigenetic_factor" type="select" label="Set cell type and epigenetic factor names by"> 127 <param name="cell_type_epigenetic_factor" type="select" label="Set cell type and epigenetic factor names by">
125 <option value="extract">extracting them from the selected input file names</option> 128 <option value="extract" selected="true">extracting them from the selected input file names</option>
126 <option value="manual" selected="true">manually setting them for each selected input</option> 129 <option value="manual">manually setting them for each selected input</option>
127 </param> 130 </param>
128 <when value="extract"> 131 <when value="extract">
129 <param name="input" type="data" format="bigwig,bam" multiple="True" label="BAM or BigWig file"> 132 <param name="input" type="data" format="bigwig,bam" multiple="True" label="BAM or BigWig file">
130 <validator type="empty_field"/> 133 <validator type="empty_field"/>
131 <validator type="unspecified_build"/> 134 <validator type="unspecified_build"/>