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comparison ideas.xml @ 24:28201e1f1633 draft

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Uploaded
author greg
date Fri, 11 Aug 2017 09:53:42 -0400
parents 64c372086d41
children 0169856fe7bb
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23:64c372086d41 24:28201e1f1633
27 #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond 27 #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
28 #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window 28 #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
29 #if str($specify_genomic_window) == 'yes': 29 #if str($specify_genomic_window) == 'yes':
30 -bed '$bed_input' 30 -bed '$bed_input'
31 #else: 31 #else:
32 -bed $tmp_dir/*.bed
33 -gsz '$chromInfo' 32 -gsz '$chromInfo'
34 -wsz $specify_genomic_window_cond.window_size 33 -wsz $specify_genomic_window_cond.window_size
35 #set restrict_chromosomes = $specify_genomic_window_cond.restrict_chromosomes_cond.restrict_chromosomes 34 #set restrict_chromosomes = $specify_genomic_window_cond.restrict_chromosomes_cond.restrict_chromosomes
36 #if str($restrict_chromosomes) == 'yes': 35 #if str($restrict_chromosomes) == 'yes':
37 #set chroms = [] 36 #set chroms = []