Mercurial > repos > greg > ideas

comparison ideas.xml @ 63:2321d1e6237d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Thu, 24 Aug 2017 07:44:31 -0400
parents cf0fbd58feb4
children 19112fe6e5bd
comparison
equal deleted inserted replaced
62:cf0fbd58feb4 63:2321d1e6237d
19 #if str($input_type) == "datasets": 19 #if str($input_type) == "datasets":
20 #set cell_type_epigenetic_factor_cond = $input_type_cond.cell_type_epigenetic_factor_cond 20 #set cell_type_epigenetic_factor_cond = $input_type_cond.cell_type_epigenetic_factor_cond
21 #set cell_type_epigenetic_factor = $cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor 21 #set cell_type_epigenetic_factor = $cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor
22 #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond 22 #set specify_genomic_window_cond = $input_type_cond.specify_genomic_window_cond
23 #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window 23 #set specify_genomic_window = $specify_genomic_window_cond.specify_genomic_window
24 cp '$prep_input_config' $prep_input_config && 24 cp '$gen_prep_input_config' $prep_input_config &&
25 prepMat 25 prepMat
26 $prep_input_config 26 $prep_input_config
27 #if str($specify_genomic_window) == "yes": 27 #if str($specify_genomic_window) == "yes":
28 -bed '$specify_genomic_window_cond.bed_input' 28 -bed '$specify_genomic_window_cond.bed_input'
29 #else: 29 #else:
108 && mv ./*.para $output_para 108 && mv ./*.para $output_para
109 && mv ./*.profile $output_profile 109 && mv ./*.profile $output_profile
110 && mv ./*.state $output_state 110 && mv ./*.state $output_state
111 ]]></command> 111 ]]></command>
112 <configfiles> 112 <configfiles>
113 <configfile name="prep_input_config"><![CDATA[ 113 <configfile name="gen_prep_input_config"><![CDATA[
114 #import os 114 #import os
115 #if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "manual": 115 #if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "manual":
116 #for $input_items in $input_type_cond.cell_type_epigenetic_factor_cond.input_repeat: 116 #for $input_items in $input_type_cond.cell_type_epigenetic_factor_cond.input_repeat:
117 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input} 117 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input}
118 #end for 118 #end for