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comparison ideas.xml @ 56:0b7b0929fb3c draft

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Uploaded
author greg
date Wed, 23 Aug 2017 14:43:50 -0400
parents fa1e5f44d79e
children 6db2dda8cb68
comparison
equal deleted inserted replaced
55:fa1e5f44d79e 56:0b7b0929fb3c
124 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input} 124 ${input_items.cell_type_name} ${input_items.epigenetic_factor_name} ${input_items.input}
125 #end for 125 #end for
126 #end if]]></configfile> 126 #end if]]></configfile>
127 <configfile name="extract_prep_input_config"><![CDATA[ 127 <configfile name="extract_prep_input_config"><![CDATA[
128 #if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "extract": 128 #if $input_type_cond.cell_type_epigenetic_factor_cond.cell_type_epigenetic_factor == "extract":
129 #set $cell_type_epigenetic_factor_cond=$input_type_cond.cell_type_epigenetic_factor_cond 129 #set $cell_type_epigenetic_factor_cond = $input_type_cond.cell_type_epigenetic_factor_cond
130 #set $input_name_positions=$cell_type_epigenetic_factor_cond.input_name_positions 130 #set $input_name_positions = $cell_type_epigenetic_factor_cond.input_name_positions
131 #for $i in $cell_type_epigenetic_factor_cond.input: 131 #for $i in $cell_type_epigenetic_factor_cond.input:
132 #set $file_name_with_ext="${i##*/}" 132 #set $file_name_with_ext = "${i##*/}"
133 #set $file_name="${file_name_with_ext%%.*}" 133 #set $file_name = "${file_name_with_ext%%.*}"
134 #if $input_name_positions == "cell_first": 134 #if $input_name_positions == "cell_first":
135 #set $cell_type_name="${file_name%-*}" 135 #set $cell_type_name = "${file_name%-*}"
136 #set $epigenetic_factor_name="${file_name#*-}" 136 #set $epigenetic_factor_name = "${file_name#*-}"
137 #else: 137 #else:
138 #set $cell_type_name="${file_name#*-}" 138 #set $cell_type_name = "${file_name#*-}"
139 #set $epigenetic_factor_name="${file_name%-*}" 139 #set $epigenetic_factor_name = "${file_name%-*}"
140 #end if 140 #end if
141 ${cell_type_name} ${epigenetic_factor_name} ${i} 141 ${cell_type_name} ${epigenetic_factor_name} ${i}
142 #end for 142 #end for
143 #end if]]></configfile> 143 #end if]]></configfile>
144 </configfiles> 144 </configfiles>