Mercurial > repos > greg > icqsol_scale_shape
view icqsol_scale_shape.py @ 2:d7c8a1ad787d draft
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author | greg |
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date | Wed, 09 Dec 2015 11:03:10 -0500 |
parents | c8b87f2bb2e8 |
children | 89216e1c25b8 |
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#!/usr/bin/env python import argparse import shutil import operator import icqsol_utils from icqsol.shapes.icqShapeManager import ShapeManager # Parse Command Line. parser = argparse.ArgumentParser() parser.add_argument('--input', dest='input', help='Shape dataset selected from history') parser.add_argument('--input_file_format_and_type', dest='input_file_format_and_type', help='Input file format and type') parser.add_argument('--input_dataset_type', dest='input_dataset_type', help='Input dataset_type') parser.add_argument('--scale_x', dest='scale_x', type=float, default=1.0, help='X scaling factor') parser.add_argument('--scale_y', dest='scale_y', type=float, default=1.0, help='Y scaling factor') parser.add_argument('--scale_z', dest='scale_z', type=float, default=1.0, help='Z scaling factor') parser.add_argument('--output', dest='output', help='Output file name') parser.add_argument('--output_vtk_type', dest='output_vtk_type', default='ascii', help='Output VTK type') args = parser.parse_args() # Get the format of the input - either vtk or ply. input_format, input_file_type = icqsol_utils.get_format_and_type(args.input_file_format_and_type) tmp_dir = icqsol_utils.get_temp_dir() # Instantiate a ShapeManager for loading the input. if input_format == icqsol_utils.VTK: shape_mgr = ShapeManager(file_format=input_format, vtk_dataset_type=args.input_dataset_type) else: shape_mgr = ShapeManager(file_format=input_format) # Get the vtk polydata from the input dataset. vtk_poly_data = shape_mgr.loadAsVtkPolyData(args.input) # Scale (in place operation). # FIXME: this should be handled in a Galaxy tool validator. factors = (args.scale_x, args.scale_y, args.scale_z) if reduce(operator.and_, [f > 0 for f in factors]): # All factors must be > 0 shape_mgr.scaleVtkPolyData(vtk_poly_data, factors=factors) # Save the output. output_format, output_file_type = icqsol_utils.get_format_and_type(args.output_vtk_type) tmp_dir = icqsol_utils.get_temp_dir() tmp_output_path = icqsol_utils.get_temporary_file_path(tmp_dir, icqsol_utils.VTK) shape_mgr.saveVtkPolyData(vtk_poly_data, file_name=tmp_output_path, file_type=output_file_type) shutil.move(tmp_output_path, args.output)