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diff abyss/abyss_wrapper.sh @ 4:a188de29f06e

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author g2cmnty@test-web1.g2.bx.psu.edu
date Tue, 28 Jun 2011 10:29:09 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/abyss/abyss_wrapper.sh	Tue Jun 28 10:29:09 2011 -0400
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+if [ $# -ne 3 ]
+then
+    echo "ERROR: Expected exactly 3 arguments; got: $*" 1>&2
+    exit 1
+fi
+
+CMD=`ABYSS -k$1 $2 -o $3 2>&1`
+if [ $? -ne 0 ]
+then
+{
+    echo "COMMAND FAILURE: $CMD" 1>&2
+    exit $?
+}
+fi