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comparison genetrack.xml @ 16:b40ad4bee6cb draft

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author greg
date Wed, 16 Dec 2015 14:17:15 -0500
parents ebafcd6c3e0e
children 5a6ea187933b
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15:ebafcd6c3e0e 16:b40ad4bee6cb
130 130
131 ----- 131 -----
132 132
133 **Options** 133 **Options**
134 134
135 * **Sigma to use when smoothing reads** - Smooths clusters of tags via a Gaussian distribution. 135 * **Sigma to use when smoothing reads** - Smooths clusters of tags via a Gaussian distribution.
136 * **Peak exclusion zone** - Exclusion zone around each peak, eliminating all other peaks on the same strand that are within a ± bp distance of the peak. 136 * **Peak exclusion zone** - Exclusion zone around each peak, eliminating all other peaks on the same strand that are within a ± bp distance of the peak.
137 * **Exclusion zone of upstream called peaks** - Defines the exclusion zone centered over peaks upstream of a peak. 137 * **Exclusion zone of upstream called peaks** - Defines the exclusion zone centered over peaks upstream of a peak.
138 * **Exclusion zone of downstream called peaks** - Defines the exclusion zone centered over peaks downstream of a peak. 138 * **Exclusion zone of downstream called peaks** - Defines the exclusion zone centered over peaks downstream of a peak.
139 * **Filter** - Absolute read filter, restricts output to only peaks with larger peak height. 139 * **Filter** - Absolute read filter, restricts output to only peaks with larger peak height.
140 </help> 140 </help>
141 <expand macro="citations" /> 141 <expand macro="citations" />
142 </tool> 142 </tool>