# HG changeset patch
# User greg
# Date 1496323919 14400
# Node ID a9f6d08ee79e793d227c2d55dbc1717e548a9a00
# Parent  88c9bd1583d8dfd8ee4826597b77a85f84f1f4a0
Uploaded

diff -r 88c9bd1583d8 -r a9f6d08ee79e gene_family_phylogeny_builder.xml
--- a/gene_family_phylogeny_builder.xml	Tue May 23 10:54:28 2017 -0400
+++ b/gene_family_phylogeny_builder.xml	Thu Jun 01 09:31:59 2017 -0400
@@ -179,6 +179,7 @@
  * **Bootstrap replicates** - number of bootstrap replicates for RAxML to conduct a rapid bootstrap analysis and search for the best-scoring ML tree (default = 100).
  * **Maximum orthogroup size** - maximum number of sequences allowed in orthogroup alignments (default = 100).
  * **Minimum orthogroup size** - minimum number of sequences allowed in orthogroup alignments (default = 4).
+ * **Output additional directory of phylogenetic tree files** - selecting 'Yes' will produce an additional output that has an associated directory of files that are copies of the  elements of the phylogenetic trees output dataset collection (this output will be used for future downstream tools).
 
 .. _repository: https://github.com/dePamphilis/PlantTribes/tree/master/config