# HG changeset patch
# User greg
# Date 1504882053 14400
# Node ID 4c9a4aa6adce9b0e016d372ef089f5ea014ec7b3
# Parent  8a6780fce33f7a791f2e5c1a9f87bb1d2effdee3
Uploaded

diff -r 8a6780fce33f -r 4c9a4aa6adce gene_family_phylogeny_builder.xml
--- a/gene_family_phylogeny_builder.xml	Fri Sep 08 10:33:23 2017 -0400
+++ b/gene_family_phylogeny_builder.xml	Fri Sep 08 10:47:33 2017 -0400
@@ -18,7 +18,8 @@
 mkdir $input_dir &&
 #for $i in $input:
     #set filename = $i.file_name
-    ln -s $filename $input_dir &&
+    #set name =$i.name
+    ln -s $filename $input_dir/$name &&
 #end for
 GeneFamilyPhylogenyBuilder
 --orthogroup_aln '$input_dir'