# HG changeset patch # User greg # Date 1507553919 14400 # Node ID 3adaaeb651c045e70aa298971d869df403bb3bff # Parent 9962341547d3a33f17c84570c4af71795f960fa0 Uploaded diff -r 9962341547d3 -r 3adaaeb651c0 gene_family_phylogeny_builder.xml --- a/gene_family_phylogeny_builder.xml Thu Oct 05 14:23:17 2017 -0400 +++ b/gene_family_phylogeny_builder.xml Mon Oct 09 08:58:39 2017 -0400 @@ -101,7 +101,6 @@ * **Bootstrap replicates** - number of bootstrap replicates for RAxML to conduct a rapid bootstrap analysis and search for the best-scoring ML tree (default = 100). * **Maximum orthogroup size** - maximum number of sequences allowed in orthogroup alignments (default = 100). * **Minimum orthogroup size** - minimum number of sequences allowed in orthogroup alignments (default = 4). - * **Output additional directory of phylogenetic tree files** - selecting 'Yes' will produce an additional output that has an associated directory of files that are copies of the elements of the phylogenetic trees output dataset collection (this output will be used for future downstream tools). .. _repository: https://github.com/dePamphilis/PlantTribes/tree/master/config