Mercurial > repos > greg > gene_family_phylogeny_builder

comparison utils.py @ 0:f4361d941aa3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Tue, 11 Apr 2017 11:05:24 -0400
parents
children eb3eb139be22
comparison
equal deleted inserted replaced
-1:000000000000 0:f4361d941aa3
1 import os
2 import shutil
3 import sys
4
5
6 def check_execution_errors(rc, stderr):
7 if rc != 0:
8 stop_err(stderr.read())
9
10
11 def move_directory_files(source_dir, destination_dir):
12 source_directory = os.path.abspath(source_dir)
13 destination_directory = os.path.abspath(destination_dir)
14 if not os.path.isdir(destination_directory):
15 os.makedirs(destination_directory)
16 for dir_entry in os.listdir(source_directory):
17 source_entry = os.path.join(source_directory, dir_entry)
18 shutil.move(source_entry, destination_directory)
19
20
21 def stop_err(msg):
22 sys.stderr.write(msg)
23 sys.exit(1)
24
25
26 def write_html_output(output, title, dir):
27 with open(output, 'w') as fh:
28 fh.write('<html><head><h3>%s</h3></head>\n' % title)
29 fh.write('<body><p/><table cellpadding="2">\n')
30 fh.write('<tr><th>Size</th><th>Name</th></tr>\n')
31 for index, fname in enumerate(sorted(os.listdir(dir))):
32 if index % 2 == 0:
33 bgcolor = '#D8D8D8'
34 else:
35 bgcolor = '#FFFFFF'
36 try:
37 size = str(os.path.getsize(os.path.join(dir, fname)))
38 except:
39 size = 'unknown'
40 link = '<a href="%s" type="text/plain">%s</a>\n' % (fname, fname)
41 fh.write('<tr bgcolor="%s"><td>%s</td><td>%s</td></tr>\n' % (bgcolor, size, link))
42 fh.write('</table></body></html>\n')