Mercurial > repos > greg > gene_family_phylogeny_builder

comparison gene_family_phylogeny_builder.xml @ 31:a456fb4d1d44 draft

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author greg
date Fri, 12 May 2017 14:18:37 -0400
parents 3d78d366dfcc
children f9b60c34dfd7
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30:2de4563e70cf 31:a456fb4d1d44
58 --output_phylip_dir '$output_phylip.files_path' 58 --output_phylip_dir '$output_phylip.files_path'
59 #end if 59 #end if
60 --min_orthogroup_size $min_orthogroup_size 60 --min_orthogroup_size $min_orthogroup_size
61 --max_orthogroup_size $max_orthogroup_size 61 --max_orthogroup_size $max_orthogroup_size
62 --num_threads \${GALAXY_SLOTS:-4} 62 --num_threads \${GALAXY_SLOTS:-4}
63 #set output_pttree_dir = output_pttree_dir_cond.output_pttree_dir 63 #set output_pttree_dir = $output_pttree_dir_cond.output_pttree_dir
64 #if str($output_pttree_dir) == 'yes': 64 #if str($output_pttree_dir) == 'yes':
65 --output_tree '$output_tree' 65 --output_tree '$output_tree'
66 --output_tree_dir '$output_tree.files_path' 66 --output_tree_dir '$output_tree.files_path'
67 #end if 67 #end if
68 ]]> 68 ]]>