Mercurial > repos > greg > gene_family_phylogeny_builder

comparison utils.py @ 55:8013d394c525 draft

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Uploaded
author greg
date Mon, 30 Oct 2017 09:05:37 -0400
parents 9962341547d3
children
comparison
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54:eef0f4704dca 55:8013d394c525
52 check_execution_errors(rc, fstderr, fstdout) 52 check_execution_errors(rc, fstderr, fstdout)
53 53
54 54
55 def stop_err(msg): 55 def stop_err(msg):
56 sys.exit(msg) 56 sys.exit(msg)
57
58
59 def write_html_output(output, title, dir):
60 with open(output, 'w') as fh:
61 dir_items = sorted(os.listdir(dir))
62 # Directories can only contain either files or directories,
63 # but not both.
64 if len(dir_items) > 0:
65 item_path = os.path.join(dir, dir_items[0])
66 if os.path.isdir(item_path):
67 header = 'Directories'
68 else:
69 header = 'Datasets'
70 else:
71 header = ''
72 fh.write('<html><head><h3>%s: %d items</h3></head>\n' % (title, len(dir_items)))
73 fh.write('<body><p/><table cellpadding="2">\n')
74 fh.write('<tr><b>%s</th></b>\n' % header)
75 for index, fname in enumerate(dir_items):
76 if index % 2 == 0:
77 bgcolor = '#D8D8D8'
78 else:
79 bgcolor = '#FFFFFF'
80 link = '<a href="%s" type="text/plain">%s</a>\n' % (fname, fname)
81 fh.write('<tr bgcolor="%s"><td>%s</td></tr>\n' % (bgcolor, link))
82 fh.write('</table></body></html>\n')