Mercurial > repos > greg > gene_family_phylogeny_builder

comparison gene_family_phylogeny_builder.xml @ 50:4c9a4aa6adce draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Fri, 08 Sep 2017 10:47:33 -0400
parents 8a6780fce33f
children 9962341547d3
comparison
equal deleted inserted replaced
49:8a6780fce33f 50:4c9a4aa6adce
16 #set bootstrap_replicates = $tree_inference_cond.bootstrap_replicates 16 #set bootstrap_replicates = $tree_inference_cond.bootstrap_replicates
17 #end if 17 #end if
18 mkdir $input_dir && 18 mkdir $input_dir &&
19 #for $i in $input: 19 #for $i in $input:
20 #set filename = $i.file_name 20 #set filename = $i.file_name
21 ln -s $filename $input_dir && 21 #set name =$i.name
22 ln -s $filename $input_dir/$name &&
22 #end for 23 #end for
23 GeneFamilyPhylogenyBuilder 24 GeneFamilyPhylogenyBuilder
24 --orthogroup_aln '$input_dir' 25 --orthogroup_aln '$input_dir'
25 --scaffold '$scaffold.fields.path' 26 --scaffold '$scaffold.fields.path'
26 --config_dir '$scaffold.fields.path' 27 --config_dir '$scaffold.fields.path'