Mercurial > repos > greg > gene_family_phylogeny_builder

comparison gene_family_phylogeny_builder.xml @ 23:4965a25fa094 draft

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author greg
date Fri, 12 May 2017 09:25:50 -0400
parents 770dd72bd12c
children e6f16430822d
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22:770dd72bd12c 23:4965a25fa094
136 <outputs> 136 <outputs>
137 <collection name="phylip" type="list"> 137 <collection name="phylip" type="list">
138 <discover_datasets pattern="__name__" directory="geneFamilyPhylogenies_dir/phylip_aln" format="phylip" /> 138 <discover_datasets pattern="__name__" directory="geneFamilyPhylogenies_dir/phylip_aln" format="phylip" />
139 </collection> 139 </collection>
140 <collection name="tree" type="list"> 140 <collection name="tree" type="list">
141 <discover_datasets pattern="__name__" directory="geneFamilyPhylogenies_dir/orthogroups_tree" format="txt" /> 141 <discover_datasets pattern="__name__" directory="geneFamilyPhylogenies_dir/orthogroups_tree" format="nhx" />
142 </collection> 142 </collection>
143 </outputs> 143 </outputs>
144 <tests> 144 <tests>
145 <test> 145 <test>
146 </test> 146 </test>
147 -->
148 </tests> 147 </tests>
149 <help> 148 <help>
150 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary 149 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary
151 analyses of genome-scale gene families and transcriptomes. This tool performs gene family phylogenetic inference of 150 analyses of genome-scale gene families and transcriptomes. This tool performs gene family phylogenetic inference of
152 multiple sequence alignments produced by the GeneFamilyAligner tool. 151 multiple sequence alignments produced by the GeneFamilyAligner tool.