Mercurial > repos > greg > gene_family_phylogeny_builder

comparison gene_family_phylogeny_builder.xml @ 26:42da330542c1 draft

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author greg
date Fri, 12 May 2017 11:26:49 -0400
parents e6f16430822d
children 6374c987b4a8
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25:e6f16430822d 26:42da330542c1
130 </conditional> 130 </conditional>
131 <param name="max_orthogroup_size" type="integer" value="100" min="0" label="Maximum orthogroup size" /> 131 <param name="max_orthogroup_size" type="integer" value="100" min="0" label="Maximum orthogroup size" />
132 <param name="min_orthogroup_size" type="integer" value="4" min="0" label="Minimum orthogroup size" /> 132 <param name="min_orthogroup_size" type="integer" value="4" min="0" label="Minimum orthogroup size" />
133 </inputs> 133 </inputs>
134 <outputs> 134 <outputs>
135 <data name="output_phylip" format="ptphylip" label="Orthogroup phylip multiple sequence alignments on ${on_string}"> 135 <data name="output_phylip" format="ptphylip" label="GeneFamilyPhylogenyBuilder orthogroup phylip multiple sequence alignments on ${on_string}">
136 <filter>tree_inference_cond['tree_inference'] == 'raxml'</filter> 136 <filter>tree_inference_cond['tree_inference'] == 'raxml'</filter>
137 </data> 137 </data>
138 <collection name="tree" type="list" label="GeneFamilyPhylogenyBuilder phylogenetic trees on ${on_string}"> 138 <collection name="tree" type="list" label="GeneFamilyPhylogenyBuilder phylogenetic trees on ${on_string}">
139 <discover_datasets pattern="__name__" directory="geneFamilyPhylogenies_dir/orthogroups_tree" format="nhx" /> 139 <discover_datasets pattern="__name__" directory="geneFamilyPhylogenies_dir/orthogroups_tree" format="nhx" />
140 </collection> 140 </collection>