Mercurial > repos > greg > gene_family_phylogeny_builder

comparison gene_family_phylogeny_builder.xml @ 13:2af26191d55d draft

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author greg
date Fri, 05 May 2017 09:33:40 -0400
parents 0307ab4f5031
children 90a2e4ed5132
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12:1bebfea6d0b6 13:2af26191d55d
2 <description>builds phylogenetic trees of aligned orthologous gene family clusters</description> 2 <description>builds phylogenetic trees of aligned orthologous gene family clusters</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_gene_family_phylogeny_builder" /> 6 <expand macro="requirements_gene_family_phylogeny_builder" />
7 <expand macro="stdio" /> 7 <command detect_errors="exit_code">
8 <command>
9 <![CDATA[ 8 <![CDATA[
10 #set input_format = $input_format_cond.input_format 9 #set input_format = $input_format_cond.input_format
11 #set tree_inference = $tree_inference_cond.tree_inference 10 #set tree_inference = $tree_inference_cond.tree_inference
12 #if str($tree_inference) == 'raxml': 11 #if str($tree_inference) == 'raxml':
13 #set rooting_order_file_cond = $tree_inference_cond.rooting_order_file_cond 12 #set rooting_order_file_cond = $tree_inference_cond.rooting_order_file_cond