# HG changeset patch # User greg # Date 1493727430 14400 # Node ID ce013ec23470ea9644b7337b8a4bb865608ccede # Parent 4978a26bdcbe0bd311b28bd38866b4fd299efa3c Uploaded diff -r 4978a26bdcbe -r ce013ec23470 gene_family_integrator.xml --- a/gene_family_integrator.xml Mon May 01 09:16:58 2017 -0400 +++ b/gene_family_integrator.xml Tue May 02 08:17:10 2017 -0400 @@ -80,15 +80,12 @@ * **Classified orthogroup fasta files** - orthogroup fasta files produced by the GeneFamilyClassifier tool selected from your history. Depending on how the GeneFamilyClassifier tool was executed, these could either be proteins or proteins and their corresponding coding sequences. - - **Proteins orthogroup fasta files** - proteins fasta files. - - **Protein and coding sequences orthogroup fasta files** - proteins and their corresponding coding sequences fasta files. - * **Gene family scaffold** - one of the PlantTribes gene family scaffolds installed into Galaxy by the PlantTribes Scaffold Data Manager tool. * **Protein clustering method** - gene family scaffold protein clustering method as described in the AssemblyPostProcessor tool. **Other options** - * **Orthogroups coding sequences** - Select 'Yes' to create corresponding coding sequences orthogroups fasta files for the classified protein sequences. + * **Orthogroups coding sequences** - Select 'Yes' to create corresponding coding sequences orthogroup fasta files for the classified protein sequences.