Mercurial > repos > greg > gene_family_integrator

comparison gene_family_integrator.py @ 1:f53cafa72117 draft

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author greg
date Thu, 06 Apr 2017 14:33:38 -0400
parents 109a0eb7791f
children d06e3ae4eb5a
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0:109a0eb7791f 1:f53cafa72117
1 #!/usr/bin/env python 1 #!/usr/bin/env python
2 import argparse 2 import argparse
3 import subprocess 3 import subprocess
4 4
5 import utils.py 5 import utils
6 6
7 OUTPUT_DIR = 'integratedGeneFamilies_dir' 7 OUTPUT_DIR = 'integratedGeneFamilies_dir'
8 8
9 parser = argparse.ArgumentParser() 9 parser = argparse.ArgumentParser()
10 parser.add_argument('--orthogroup_faa', dest='orthogroup_faa', help="Directory of input fasta datasets") 10 parser.add_argument('--orthogroup_faa', dest='orthogroup_faa', help="Directory of input fasta datasets")