Mercurial > repos > greg > gene_family_integrator

comparison gene_family_integrator.py @ 3:d06e3ae4eb5a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Thu, 06 Apr 2017 14:57:38 -0400
parents f53cafa72117
children 1d178e90fbe6
comparison
equal deleted inserted replaced
2:bbc56c8688ff 3:d06e3ae4eb5a
16 16
17 args = parser.parse_args() 17 args = parser.parse_args()
18 18
19 # Build the command line. 19 # Build the command line.
20 cmd = 'GeneFamilyIntegrator' 20 cmd = 'GeneFamilyIntegrator'
21 cmd += ' --orthogroup_faa %s' % args.orthogroup_fasta 21 cmd += ' --orthogroup_faa %s' % args.orthogroup_faa
22 cmd += ' --scaffold %s' % args.scaffold 22 cmd += ' --scaffold %s' % args.scaffold
23 cmd += ' --method %s' % args.method 23 cmd += ' --method %s' % args.method
24 if args.orthogroup_fna is not None: 24 if args.orthogroup_fna is not None:
25 cmd += ' --orthogroup_fna' 25 cmd += ' --orthogroup_fna'
26 # Run the command. 26 # Run the command.