Mercurial > repos > greg > gene_family_integrator

comparison gene_family_integrator.xml @ 11:ce013ec23470 draft

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author greg
date Tue, 02 May 2017 08:17:10 -0400
parents 4978a26bdcbe
children 57f27f72c771
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10:4978a26bdcbe 11:ce013ec23470
78 78
79 **Required options** 79 **Required options**
80 80
81 * **Classified orthogroup fasta files** - orthogroup fasta files produced by the GeneFamilyClassifier tool selected from your history. Depending on how the GeneFamilyClassifier tool was executed, these could either be proteins or proteins and their corresponding coding sequences. 81 * **Classified orthogroup fasta files** - orthogroup fasta files produced by the GeneFamilyClassifier tool selected from your history. Depending on how the GeneFamilyClassifier tool was executed, these could either be proteins or proteins and their corresponding coding sequences.
82 82
83 - **Proteins orthogroup fasta files** - proteins fasta files.
84 - **Protein and coding sequences orthogroup fasta files** - proteins and their corresponding coding sequences fasta files.
85
86 * **Gene family scaffold** - one of the PlantTribes gene family scaffolds installed into Galaxy by the PlantTribes Scaffold Data Manager tool. 83 * **Gene family scaffold** - one of the PlantTribes gene family scaffolds installed into Galaxy by the PlantTribes Scaffold Data Manager tool.
87 * **Protein clustering method** - gene family scaffold protein clustering method as described in the AssemblyPostProcessor tool. 84 * **Protein clustering method** - gene family scaffold protein clustering method as described in the AssemblyPostProcessor tool.
88 85
89 **Other options** 86 **Other options**
90 87
91 * **Orthogroups coding sequences** - Select 'Yes' to create corresponding coding sequences orthogroups fasta files for the classified protein sequences. 88 * **Orthogroups coding sequences** - Select 'Yes' to create corresponding coding sequences orthogroup fasta files for the classified protein sequences.
92 89
93 </help> 90 </help>
94 <citations> 91 <citations>
95 <expand macro="citation1" /> 92 <expand macro="citation1" />
96 <citation type="bibtex"> 93 <citation type="bibtex">