Mercurial > repos > greg > gene_family_integrator

comparison gene_family_integrator.xml @ 2:bbc56c8688ff draft

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author greg
date Thu, 06 Apr 2017 14:55:32 -0400
parents 109a0eb7791f
children 9fff0561bc8e
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1:f53cafa72117 2:bbc56c8688ff
17 #if str($input_format) == 'ptortho': 17 #if str($input_format) == 'ptortho':
18 --orthogroup_faa '$input_format_cond.input_ptortho.extra_files_path' 18 --orthogroup_faa '$input_format_cond.input_ptortho.extra_files_path'
19 #else: 19 #else:
20 ## str($input_format) == 'ptorthocs' 20 ## str($input_format) == 'ptorthocs'
21 --orthogroup_faa '$input_format_cond.input_ptorthocs.extra_files_path' 21 --orthogroup_faa '$input_format_cond.input_ptorthocs.extra_files_path'
22 #if str($orthogroup_fna) == 'yes': 22 #if str($input_format_cond.orthogroup_fna) == 'yes':
23 --orthogroup_fna 'true' 23 --orthogroup_fna 'true'
24 #end if 24 #end if
25 #end if 25 #end if
26 --output '$output_html' 26 --output '$output_html'
27 --output_dir '$output_html.files_path' 27 --output_dir '$output_html.files_path'
66 * **Gene family scaffold** - one of the PlantTribes gene family scaffolds [2-4] installed into Galaxy by the PlantTribes Scaffold Data Manager tool. 66 * **Gene family scaffold** - one of the PlantTribes gene family scaffolds [2-4] installed into Galaxy by the PlantTribes Scaffold Data Manager tool.
67 * **Protein clustering method** - gene family scaffold protein clustering method as described in the AssemblyPostProcessor tool. 67 * **Protein clustering method** - gene family scaffold protein clustering method as described in the AssemblyPostProcessor tool.
68 68
69 **Other options** 69 **Other options**
70 70
71 * Process corresponding gene family classification orthogroups CDS fasta files? - Select 'Yes' top process corresponding gene family classification orthogroups CDS fasta files. 71 * **Process corresponding gene family classification orthogroups CDS fasta files** - Select 'Yes' top process corresponding gene family classification orthogroups CDS fasta files.
72 72
73 </help> 73 </help>
74 <citations> 74 <citations>
75 <expand macro="citation1" /> 75 <expand macro="citation1" />
76 <expand macro="citations2to4" /> 76 <expand macro="citations2to4" />