Mercurial > repos > greg > gene_family_integrator

comparison gene_family_integrator.xml @ 31:435b622bae05 draft

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Uploaded
author greg
date Wed, 13 Dec 2017 14:09:49 -0500
parents 2fc444a858b6
children 1c31f5bd0f27
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30:58cbad7dc6d1 31:435b622bae05
16 #end for 16 #end for
17 GeneFamilyIntegrator 17 GeneFamilyIntegrator
18 --orthogroup_fasta '$input_dir' 18 --orthogroup_fasta '$input_dir'
19 --scaffold '$scaffold.fields.path' 19 --scaffold '$scaffold.fields.path'
20 --method $method 20 --method $method
21 &>proc.log 21 &>gene_family_integrator_log.txt;
22 if [[ $? -ne 0 ]]; then
23 cp gene_family_integrator_log.txt integratedGeneFamilies_dir;
24 exit 1;
25 fi
22 ]]></command> 26 ]]></command>
23 <inputs> 27 <inputs>
24 <param name="input" format="fasta" type="data_collection" collection_type="list" label="Classified orthogroup fasta files" /> 28 <param name="input" format="fasta" type="data_collection" collection_type="list" label="Classified orthogroup fasta files" />
25 <expand macro="param_scaffold" /> 29 <expand macro="param_scaffold" />
26 <expand macro="param_method" /> 30 <expand macro="param_method" />