Mercurial > repos > greg > gene_family_integrator

comparison macros.xml @ 6:1d178e90fbe6 draft

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author greg
date Mon, 10 Apr 2017 11:30:34 -0400
parents 077f036ca17d
children 87e2450855c2
comparison
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5:077f036ca17d 6:1d178e90fbe6
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <macros> 2 <macros>
3 <token name="@WRAPPER_VERSION@">0.8</token>
3 <xml name="requirements_assembly_post_processor"> 4 <xml name="requirements_assembly_post_processor">
4 <requirements> 5 <requirements>
5 <requirement type="package" version="0.4">plant_tribes_assembly_post_processor</requirement> 6 <requirement type="package" version="0.4">plant_tribes_assembly_post_processor</requirement>
6 </requirements> 7 </requirements>
7 </xml> 8 </xml>
21 </requirements> 22 </requirements>
22 </xml> 23 </xml>
23 <xml name="requirements_kaks_analysis"> 24 <xml name="requirements_kaks_analysis">
24 <requirements> 25 <requirements>
25 <requirement type="package" version="0.8">plant_tribes_kaks_analysis</requirement> 26 <requirement type="package" version="0.8">plant_tribes_kaks_analysis</requirement>
27 </requirements>
28 </xml>
29 <xml name="requirements_gene_family_phylogeny_builder">
30 <requirements>
31 <requirement type="package" version="0.8">plant_tribes_gene_family_phylogeny_builder</requirement>
26 </requirements> 32 </requirements>
27 </xml> 33 </xml>
28 <xml name="stdio"> 34 <xml name="stdio">
29 <stdio> 35 <stdio>
30 <exit_code range="1:"/> 36 <exit_code range="1:"/>
84 </param> 90 </param>
85 <when value="no" /> 91 <when value="no" />
86 <when value="yes"> 92 <when value="yes">
87 <conditional name="trim_type_cond"> 93 <conditional name="trim_type_cond">
88 <param name="trim_type" type="select" label="Select process used for gap trimming"> 94 <param name="trim_type" type="select" label="Select process used for gap trimming">
89 <option value="gap_trimming" selected="true">Nucleotide based </option> 95 <option value="gap_trimming" selected="true">Nucleotide based</option>
90 <option value="automated_trimming">Trim alignments using trimAl's ML heuristic trimming approach</option> 96 <option value="automated_trimming">Trim alignments using trimAl's ML heuristic trimming approach</option>
91 </param> 97 </param>
92 <when value="gap_trimming"> 98 <when value="gap_trimming">
93 <param name="gap_trimming" type="float" value="0" min="0" max="1.0" label="Remove sites in alignments with gaps of" help="Zero value has no affect" /> 99 <param name="gap_trimming" type="float" value="0" min="0" max="1.0" label="Remove sites in alignments with gaps of" help="Zero value has no affect" />
94 </when> 100 </when>