Mercurial > repos > greg > gene_family_classifier
changeset 62:ffaedadf9c18 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 09 Feb 2017 10:53:31 -0500 |
| parents | 43d6e752f181 |
| children | dd22169524ee |
| files | gene_family_classifier.xml |
| diffstat | 1 files changed, 7 insertions(+), 11 deletions(-) [+] |
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--- a/gene_family_classifier.xml Thu Feb 09 10:51:00 2017 -0500 +++ b/gene_family_classifier.xml Thu Feb 09 10:53:31 2017 -0500 @@ -106,22 +106,18 @@ #end if #if $create_ortho_sequences: - #if len($os.listdir($orthogroups_fasta_src_dir)) > 0: - #if $create_corresponding_coding_sequences: - && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs - #else: - && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgf - #end if - && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir + #if $create_corresponding_coding_sequences: + && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs + #else: + && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgf #end if + && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir #end if #if $single_copy_orthogroup: #if $create_ortho_sequences: - #if len($os.listdir($single_copy_fasta_src_dir)) > 0: - && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco - && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir - #end if + && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco + && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir #else: && mv geneFamilyClassification_dir/*.singleCopy $output_single_copy #end if