Mercurial > repos > greg > gene_family_classifier

changeset 75:b7a45b06e735 draft

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Uploaded
author greg
date Wed, 22 Feb 2017 07:50:48 -0500
parents 9969b17ae656
children 48a6789bc6ac
files gene_family_classifier.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_classifier.xml	Mon Feb 20 10:56:01 2017 -0500
+++ b/gene_family_classifier.xml	Wed Feb 22 07:50:48 2017 -0500
@@ -113,7 +113,7 @@
             #if $create_ortho_sequences:
                 #if $create_corresponding_coding_sequences:
                     && echo -e "#Size\tName" > $output_ptorthocs
-                    && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptorthocs
+                    && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t<a href=\""$orthogroups_fasta_src_dir/"$9"\">"$9"</a>"}' >> $output_ptorthocs
                 #else:
                     && echo -e "#Size\tName" > $output_ptortho
                     && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptortho