Mercurial > repos > greg > gene_family_classifier

changeset 25:9be4bb807c21 draft

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Uploaded
author greg
date Thu, 12 Jan 2017 10:00:50 -0500
parents 93c2ac892a19
children e9bf17c24260
files gene_family_classifier.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_classifier.xml	Wed Jan 11 13:32:57 2017 -0500
+++ b/gene_family_classifier.xml	Thu Jan 12 10:00:50 2017 -0500
@@ -72,11 +72,11 @@
 
             #if $create_ortho_sequences:
                 #if $create_corresponding_coding_sequences:
-                    && echo "Sequences classified into pre-computed orthologous plant gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | wc -l` files" > $output
+                    && echo "Sequences classified into pre-computed orthologous plant gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output
                 #else:
-                    && echo "Sequences classified into pre-computed orthologous plant gene family clusters: `ls $orthogroups_fasta_src_dir | wc -l` files" > $output
+                    && echo "Sequences classified into pre-computed orthologous plant gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output
                 #end if
-                && ls $orthogroups_fasta_src_dir >> $output
+                && ls -al $orthogroups_fasta_src_dir | grep f >> $output
                 && mv $orthogroups_fasta_src_dir/* $dest_dir
             #end if