Mercurial > repos > greg > gene_family_classifier
changeset 21:795745116516 draft
Uploaded
author | greg |
---|---|
date | Tue, 10 Jan 2017 10:33:47 -0500 |
parents | 038777896b71 |
children | 035e8b85cdf7 |
files | gene_family_classifier.xml |
diffstat | 1 files changed, 15 insertions(+), 8 deletions(-) [+] |
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--- a/gene_family_classifier.xml Tue Jan 10 10:16:18 2017 -0500 +++ b/gene_family_classifier.xml Tue Jan 10 10:33:47 2017 -0500 @@ -12,19 +12,26 @@ </stdio> <command> <![CDATA[ - #if str($options_type.options_type_selector) == 'advanced' and str($options_type.create_orthogroup_cond.create_orthogroup) == 'yes': - #import os - #set create_ortho_sequences = True - #set orthogroups_fasta_src_dir = $os.path.join('geneFamilyClassification_dir', 'orthogroups_fasta') - #set dest_dir = $output.extra_files_path + #if str($options_type.options_type_selector) == 'advanced': #set create_orthogroup_cond = $options_type.create_orthogroup_cond #set create_orthogroup = $create_orthogroup_cond.create_orthogroup - #set create_corresponding_coding_sequences_cond = $create_orthogroup_cond.create_corresponding_coding_sequences_cond - #if str($create_corresponding_coding_sequences_cond.create_corresponding_coding_sequences) == 'yes': - #set create_corresponding_coding_sequences = True + #if str($create_orthogroup) == 'yes': + #set create_corresponding_coding_sequences_cond = $create_orthogroup_cond.create_corresponding_coding_sequences_cond + #if str($create_corresponding_coding_sequences_cond.create_corresponding_coding_sequences) == 'yes': + #set create_corresponding_coding_sequences = True + #else: + #set create_corresponding_coding_sequences = False #else: #set create_corresponding_coding_sequences = False #end if + #if str($create_orthogroup) == 'yes': + #import os + #set create_ortho_sequences = True + #set orthogroups_fasta_src_dir = $os.path.join('geneFamilyClassification_dir', 'orthogroups_fasta') + #set dest_dir = $output.extra_files_path + #else: + #set create_ortho_sequences = False + #end if mkdir -p $dest_dir && #else: #set create_ortho_sequences = False