Mercurial > repos > greg > gene_family_classifier

changeset 40:6cf0fff77dea draft

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Uploaded
author greg
date Mon, 06 Feb 2017 09:35:08 -0500
parents c4f809cd2f38
children ae992973fe7b
files gene_family_classifier.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_classifier.xml	Mon Feb 06 09:04:44 2017 -0500
+++ b/gene_family_classifier.xml	Mon Feb 06 09:35:08 2017 -0500
@@ -80,12 +80,12 @@
             #if $create_ortho_sequences:
                 #if $create_corresponding_coding_sequences:
                     && echo '#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgfcs
-                    && echo '#Size    File' > $output_ptcgfcs
-                    && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptcgfcs
+                    && awk '{print #Size"\t\t\t"File}' >> $output_ptcgfcs
+                    && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgfcs
                 #else:
                     && echo '#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgf
-                    && echo '#Size    File' > $output_ptcgf
-                    && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptcgf
+                    && awk '{print #Size"\t\t\t"File}' >> $output_ptcgf
+                    && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgf
                 #end if
                 && mv $orthogroups_fasta_src_dir/* $dest_dir || true
             #end if