# HG changeset patch # User greg # Date 1486389884 18000 # Node ID c4f809cd2f3893d23503de143e2f441366f412c8 # Parent b63f96ff6708fcd7d0d9f3139d13a31e7472cf69 Uploaded diff -r b63f96ff6708 -r c4f809cd2f38 gene_family_classifier.xml --- a/gene_family_classifier.xml Thu Feb 02 14:41:34 2017 -0500 +++ b/gene_family_classifier.xml Mon Feb 06 09:04:44 2017 -0500 @@ -13,10 +13,10 @@ $output_ptcgfcs - && ls -al $orthogroups_fasta_src_dir | grep f >> $output_ptcgfcs + && echo '#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgfcs + && echo '#Size File' > $output_ptcgfcs + && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptcgfcs #else: - && echo "# Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgf - && ls -al $orthogroups_fasta_src_dir | grep f >> $output_ptcgf + && echo '#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgf + && echo '#Size File' > $output_ptcgf + && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptcgf #end if && mv $orthogroups_fasta_src_dir/* $dest_dir || true #end if @@ -94,7 +96,7 @@ - + @@ -180,8 +182,8 @@ - - +