# HG changeset patch # User greg # Date 1483555929 18000 # Node ID b75510484c1605069f700162471c75eb113e831a # Parent b0a29067fc353a40de0c639de3b220dfd4655404 Uploaded diff -r b0a29067fc35 -r b75510484c16 gene_family_classifier.xml --- a/gene_family_classifier.xml Wed Jan 04 13:38:07 2017 -0500 +++ b/gene_family_classifier.xml Wed Jan 04 13:52:09 2017 -0500 @@ -37,9 +37,13 @@ #end if --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds" --num_threads \${GALAXY_SLOTS:-4} + #if str($classifier) == 'hmmscan' or str($classifier) == 'both': + # Eliminate the hmmscan.log file + && rm $src_dir/*.log + #end if #if create_ortho_sequences: - echo "Sequences classified into pre-computed orthologous plant gene family clusters: `ls $src_dir | wc -l` files" > $output && - mv $src_dir/* $dest_dir + && echo "Sequences classified into pre-computed orthologous plant gene family clusters: `ls $src_dir | wc -l` files" > $output + && mv $src_dir/* $dest_dir #end if ]]> @@ -99,7 +103,7 @@ options_type['options_type_selector'] == 'advanced' and options_type['create_orthogroup_cond']['create_orthogroup'] == 'yes' - +