# HG changeset patch
# User greg
# Date 1483555929 18000
# Node ID b75510484c1605069f700162471c75eb113e831a
# Parent b0a29067fc353a40de0c639de3b220dfd4655404
Uploaded
diff -r b0a29067fc35 -r b75510484c16 gene_family_classifier.xml
--- a/gene_family_classifier.xml Wed Jan 04 13:38:07 2017 -0500
+++ b/gene_family_classifier.xml Wed Jan 04 13:52:09 2017 -0500
@@ -37,9 +37,13 @@
#end if
--scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds"
--num_threads \${GALAXY_SLOTS:-4}
+ #if str($classifier) == 'hmmscan' or str($classifier) == 'both':
+ # Eliminate the hmmscan.log file
+ && rm $src_dir/*.log
+ #end if
#if create_ortho_sequences:
- echo "Sequences classified into pre-computed orthologous plant gene family clusters: `ls $src_dir | wc -l` files" > $output &&
- mv $src_dir/* $dest_dir
+ && echo "Sequences classified into pre-computed orthologous plant gene family clusters: `ls $src_dir | wc -l` files" > $output
+ && mv $src_dir/* $dest_dir
#end if
]]>
@@ -99,7 +103,7 @@
options_type['options_type_selector'] == 'advanced' and options_type['create_orthogroup_cond']['create_orthogroup'] == 'yes'
-
+