# HG changeset patch
# User greg
# Date 1486652962 18000
# Node ID b45dd85b67cf7605e75e8c2a89259d281cbb88a2
# Parent  c6b874c29dbd40107d896bdc3d240e5f7d047bc1
Uploaded

diff -r c6b874c29dbd -r b45dd85b67cf gene_family_classifier.xml
--- a/gene_family_classifier.xml	Thu Feb 09 09:31:49 2017 -0500
+++ b/gene_family_classifier.xml	Thu Feb 09 10:09:22 2017 -0500
@@ -104,6 +104,16 @@
                 #end if
             #end if
 
+            && echo $create_ortho_sequences
+            && echo $orthogroups_fasta_src_dir
+            && echo $os.path.exists($orthogroups_fasta_src_dir)
+            && echo len($os.listdir($orthogroups_fasta_src_dir)) > 0:
+            && echo $create_corresponding_coding_sequences
+            && echo $orthogroups_fasta_dest_dir
+            && echo $single_copy_orthogroup
+            && echo $single_copy_fasta_src_dir
+            && echo len($os.listdir($single_copy_fasta_src_dir)) > 0
+            
             #if $create_ortho_sequences and $os.path.exists($orthogroups_fasta_src_dir) and len($os.listdir($orthogroups_fasta_src_dir)) > 0:
                 #if $create_corresponding_coding_sequences:
                     && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgfcs