# HG changeset patch # User greg # Date 1486395090 18000 # Node ID ae992973fe7be47b61794d1e12147e38c74350d3 # Parent 6cf0fff77dea2def25633ce6d761c572b8bfb0ab Uploaded diff -r 6cf0fff77dea -r ae992973fe7b gene_family_classifier.xml --- a/gene_family_classifier.xml Mon Feb 06 09:35:08 2017 -0500 +++ b/gene_family_classifier.xml Mon Feb 06 10:31:30 2017 -0500 @@ -79,11 +79,11 @@ #if $create_ortho_sequences: #if $create_corresponding_coding_sequences: - && echo '#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgfcs + && echo "#Precomputed orthologous gene family clusters with corresponding coding sequences: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgfcs && awk '{print #Size"\t\t\t"File}' >> $output_ptcgfcs && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgfcs #else: - && echo '#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files' > $output_ptcgf + && echo "#Precomputed orthologous gene family clusters: `ls $orthogroups_fasta_src_dir | grep f | wc -l` files" > $output_ptcgf && awk '{print #Size"\t\t\t"File}' >> $output_ptcgf && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t\t\t"$9}' >> $output_ptcgf #end if