# HG changeset patch
# User greg
# Date 1487606161 18000
# Node ID 9969b17ae6567209d73442ddc5daa01ef669b048
# Parent 6e859426c8731bcc31f1b5a3c2389f58d8aa800e
Uploaded
diff -r 6e859426c873 -r 9969b17ae656 gene_family_classifier.xml
--- a/gene_family_classifier.xml Fri Feb 17 14:00:43 2017 -0500
+++ b/gene_family_classifier.xml Mon Feb 20 10:56:01 2017 -0500
@@ -118,14 +118,14 @@
&& echo -e "#Size\tName" > $output_ptortho
&& ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptortho
#end if
- && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir
+ && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
#end if
#if $single_copy_orthogroup:
#if $create_ortho_sequences:
&& echo -e "#Size\tName" > $output_ptsco
&& ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptsco
- && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir
+ && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true
#end if
#end if
]]>
@@ -256,8 +256,6 @@
-
-
This tool is one of the PlantTribes' collection of automated modular analysis pipelines that utilize objective classifications of