# HG changeset patch
# User greg
# Date 1486569722 18000
# Node ID 906d5277042c9f72935163d9438c41bf3b7cae25
# Parent  4a6834056e1e687e8651878f51f4674c8059f945
Uploaded

diff -r 4a6834056e1e -r 906d5277042c gene_family_classifier.xml
--- a/gene_family_classifier.xml	Tue Feb 07 14:24:32 2017 -0500
+++ b/gene_family_classifier.xml	Wed Feb 08 11:02:02 2017 -0500
@@ -96,12 +96,16 @@
                 #else:
                     && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptcgf
                 #end if
-                && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
+                #if len($os.listdir($orthogroups_fasta_src_dir)) > 0:
+                    && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
+                #end if
             #end if
 
             #if $single_copy_orthogroup:
                 && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' > $output_ptsco
-                && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true
+                #if len($os.listdir($single_copy_fasta_src_dir)) > 0:
+                    && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true
+                #end if
             #end if
         ]]>
     </command>