# HG changeset patch
# User greg
# Date 1490107108 14400
# Node ID 78d2a8b63c138fddf8dc2231bfb9bbf7b1a0515c
# Parent  cf5a7194d866d79dd4075e3381b01286cdeb6de0
Uploaded

diff -r cf5a7194d866 -r 78d2a8b63c13 gene_family_classifier.xml
--- a/gene_family_classifier.xml	Tue Mar 21 10:30:35 2017 -0400
+++ b/gene_family_classifier.xml	Tue Mar 21 10:38:28 2017 -0400
@@ -261,7 +261,7 @@
  * **Proteins fasta file** - proteins fasta file either produced by the AssemblyPostProcessor tool or an external source selected from your history.
  * **Gene family scaffold** - one of the PlantTribes gene family scaffolds [2-4] installed into Galaxy by the PlantTribes Scaffold Data Manager tool.
  * **Protein clustering method** - gene family scaffold protein clustering method as described in the AssemblyPostProcessor tool.
- * **Protein classifier** - Classifier to assign protein sequences into a specified scaffold orthogroups. PlantTribes implements three classification approaches; blastp (faster)[5], hmmscan (slower but more sensitive to the remote homologs)[6], and both blastp and hmmscan (more exhaustive).
+ * **Protein classifier** - classifier to assign protein sequences into a specified scaffold orthogroups. PlantTribes implements three classification approaches; blastp (faster)[5], hmmscan (slower but more sensitive to the remote homologs)[6], and both blastp and hmmscan (more exhaustive).
 
 **Other options**
 
@@ -277,10 +277,10 @@
 
        * **Custom selection file** - select a single/low-copy customized configuration file from your history.
 
-     * **Global selection configuration** - Used with "Global selection" configuration only.
+     * **Global selection configuration**
 
-       * **Minimum single copy taxa** - Minimum number of taxa with single copy genes in the orthogroup.
-       * **Minimum taxa present** - Minimum number of taxa present in the orthogroup.
+       * **Minimum single copy taxa** - minimum number of taxa with single copy genes in the orthogroup.
+       * **Minimum taxa present** - minimum number of taxa present in the orthogroup.
 
  * **Orthogroups fasta configuration** - select ‘Yes’ to create proteins orthogroups fasta files for the classified sequences.