# HG changeset patch # User greg # Date 1490107800 14400 # Node ID 5f2d55dca8b570f503f9b93dd2584ea77c670000 # Parent 5fc33b2cbccc8eb5c46390a6b45894e73457dfd2 Uploaded diff -r 5fc33b2cbccc -r 5f2d55dca8b5 gene_family_classifier.xml --- a/gene_family_classifier.xml Tue Mar 21 10:42:34 2017 -0400 +++ b/gene_family_classifier.xml Tue Mar 21 10:50:00 2017 -0400 @@ -273,7 +273,7 @@ * **Selection criterion** - single/low-copy orthogroups selection criterion. PlantTribes provides custom and global selection criteria for selecting user defined single/low-copy scaffold orthogoups. - * **Custom selection configuration** - select ‘Yes’ to enable selection of a single copy configuration file. Scaffold configuration templates(.singleCopy.config) of how to customize single/low-copy orthogroups selection can be found in the scaffold data installed into Galaxy via the PlantTribes Scaffolds Download Data Manager tool, and also available at the PlantTribes GitHub repository (https://github.com/dePamphilis/PlantTribes/config ). Single/low-copy settings shown in these templates are used as defaults if ‘No’ is selected. + * **Custom selection configuration** - select ‘Yes’ to enable selection of a single copy configuration file. Scaffold configuration templates (.singleCopy.config) of how to customize single/low-copy orthogroups selection can be found in the scaffold data installed into Galaxy via the PlantTribes Scaffolds Download Data Manager tool, and also available at the PlantTribes GitHub repository (https://github.com/dePamphilis/PlantTribes/config ). Single/low-copy settings shown in these templates are used as defaults if ‘No’ is selected. * **Custom selection file** - select a single/low-copy customized configuration file from your history. @@ -284,7 +284,7 @@ * **Orthogroups fasta configuration** - select ‘Yes’ to create proteins orthogroups fasta files for the classified sequences. - * **Orthogroups coding sequences** - select ‘Yes’ to create corresponding coding sequences orthogroups fasta files for the classified protein sequences. Requires coding sequences fasta file corresponding proteins fasta file to be selected from your history. + * **Orthogroups coding sequences** - select ‘Yes’ to create corresponding coding sequences orthogroups fasta files for the classified protein sequences. Requires coding sequences fasta file corresponding to the proteins fasta file to be selected from your history. * **Coding sequences fasta file** - select coding sequences fasta file corresponding to the proteins fasta file from your history.