# HG changeset patch # User greg # Date 1488211670 18000 # Node ID 5aaa248ffcb67255e06e447db6d8442016fa408f # Parent cd23ab8b617fac1612f2cf661602b3899e9c699f Uploaded diff -r cd23ab8b617f -r 5aaa248ffcb6 gene_family_classifier.xml --- a/gene_family_classifier.xml Mon Feb 27 11:07:43 2017 -0500 +++ b/gene_family_classifier.xml Mon Feb 27 11:07:50 2017 -0500 @@ -94,13 +94,16 @@ #if $create_ortho_sequences: #if $create_corresponding_coding_sequences: --output_ptorthocs '$output_ptorthocs' + --output_ptorthocs_dir '$output_ptorthocs.files_path' #else: --output_ptortho '$output_ptortho' + --output_ptortho_dir '$output_ptortho.files_path' #end if #end if #if $single_copy_orthogroup: #if $create_ortho_sequences: --output_ptsco '$output_ptsco' + --output_ptsco_dir '$output_ptsco.files_path' #end if #end if ]]>