# HG changeset patch
# User greg
# Date 1488211670 18000
# Node ID 5aaa248ffcb67255e06e447db6d8442016fa408f
# Parent  cd23ab8b617fac1612f2cf661602b3899e9c699f
Uploaded

diff -r cd23ab8b617f -r 5aaa248ffcb6 gene_family_classifier.xml
--- a/gene_family_classifier.xml	Mon Feb 27 11:07:43 2017 -0500
+++ b/gene_family_classifier.xml	Mon Feb 27 11:07:50 2017 -0500
@@ -94,13 +94,16 @@
             #if $create_ortho_sequences:
                 #if $create_corresponding_coding_sequences:
                     --output_ptorthocs '$output_ptorthocs'
+                    --output_ptorthocs_dir '$output_ptorthocs.files_path'
                 #else:
                     --output_ptortho '$output_ptortho'
+                    --output_ptortho_dir '$output_ptortho.files_path'
                 #end if
             #end if
             #if $single_copy_orthogroup:
                 #if $create_ortho_sequences:
                     --output_ptsco '$output_ptsco'
+                    --output_ptsco_dir '$output_ptsco.files_path'
                 #end if
             #end if
         ]]>