# HG changeset patch # User greg # Date 1487769052 18000 # Node ID 48a6789bc6ac2d04e66c59bb3e350ab7a5bbacfd # Parent b7a45b06e7355eef194f24886ca1620e438ed667 Uploaded diff -r b7a45b06e735 -r 48a6789bc6ac gene_family_classifier.xml --- a/gene_family_classifier.xml Wed Feb 22 07:50:48 2017 -0500 +++ b/gene_family_classifier.xml Wed Feb 22 08:10:52 2017 -0500 @@ -113,10 +113,10 @@ #if $create_ortho_sequences: #if $create_corresponding_coding_sequences: && echo -e "#Size\tName" > $output_ptorthocs - && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9""}' >> $output_ptorthocs + && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9""}' >> $output_ptorthocs #else: && echo -e "#Size\tName" > $output_ptortho - && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptortho + && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9""}' >> $output_ptortho #end if && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true #end if @@ -124,7 +124,7 @@ #if $single_copy_orthogroup: #if $create_ortho_sequences: && echo -e "#Size\tName" > $output_ptsco - && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptsco + && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9""}' >> $output_ptsco && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true #end if #end if