# HG changeset patch
# User greg
# Date 1487769052 18000
# Node ID 48a6789bc6ac2d04e66c59bb3e350ab7a5bbacfd
# Parent b7a45b06e7355eef194f24886ca1620e438ed667
Uploaded
diff -r b7a45b06e735 -r 48a6789bc6ac gene_family_classifier.xml
--- a/gene_family_classifier.xml Wed Feb 22 07:50:48 2017 -0500
+++ b/gene_family_classifier.xml Wed Feb 22 08:10:52 2017 -0500
@@ -113,10 +113,10 @@
#if $create_ortho_sequences:
#if $create_corresponding_coding_sequences:
&& echo -e "#Size\tName" > $output_ptorthocs
- && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9""}' >> $output_ptorthocs
+ && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9""}' >> $output_ptorthocs
#else:
&& echo -e "#Size\tName" > $output_ptortho
- && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptortho
+ && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9""}' >> $output_ptortho
#end if
&& mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true
#end if
@@ -124,7 +124,7 @@
#if $single_copy_orthogroup:
#if $create_ortho_sequences:
&& echo -e "#Size\tName" > $output_ptsco
- && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9}' >> $output_ptsco
+ && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t"$9""}' >> $output_ptsco
&& mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true
#end if
#end if