# HG changeset patch
# User greg
# Date 1486655189 18000
# Node ID 2a9396e4fdbed4bd4f242a684c2f15ea6e89512a
# Parent  46ed7233db2100a8b8cbd7211e89b730454673f3
Uploaded

diff -r 46ed7233db21 -r 2a9396e4fdbe gene_family_classifier.xml
--- a/gene_family_classifier.xml	Thu Feb 09 10:33:47 2017 -0500
+++ b/gene_family_classifier.xml	Thu Feb 09 10:46:29 2017 -0500
@@ -106,7 +106,10 @@
             #end if
 
             #if $create_ortho_sequences:
-                #while not $os.path.exists($orthogroups_fasta_src_dir):
+                #while True:
+                    #if $os.path.exists($orthogroups_fasta_src_dir):
+                        #break
+                    #end if
                     $time.sleep(5)
                 #end while
                 #if len($os.listdir($orthogroups_fasta_src_dir)) > 0:
@@ -121,7 +124,10 @@
 
             #if $single_copy_orthogroup:
                 #if $create_ortho_sequences:
-                    #while not $os.path.exists($single_copy_fasta_src_dir):
+                    #while True:
+                        #if $os.path.exists($single_copy_fasta_src_dir):
+                            #break
+                        #end if
                         $time.sleep(5)
                     #end while
                     #if len($os.listdir($single_copy_fasta_src_dir)) > 0: