# HG changeset patch
# User greg
# Date 1484062902 18000
# Node ID 1d3e9e154750788f82b794dcab076df03a67d83b
# Parent  035e8b85cdf777df1a3e8271e903f0967f825d86
Uploaded

diff -r 035e8b85cdf7 -r 1d3e9e154750 gene_family_classifier.xml
--- a/gene_family_classifier.xml	Tue Jan 10 10:36:22 2017 -0500
+++ b/gene_family_classifier.xml	Tue Jan 10 10:41:42 2017 -0500
@@ -23,21 +23,19 @@
                     #else:
                         #set create_corresponding_coding_sequences = False
                     #end if
-                #else:
-                    #set create_corresponding_coding_sequences = False
-                #end if
 
-                #if str($create_orthogroup) == 'yes':
                     #import os
                     #set create_ortho_sequences = True
                     #set orthogroups_fasta_src_dir = $os.path.join('geneFamilyClassification_dir', 'orthogroups_fasta')
                     #set dest_dir = $output.extra_files_path
+                    mkdir -p $dest_dir &&
                 #else:
                     #set create_ortho_sequences = False
+                    #set create_corresponding_coding_sequences = False
                 #end if
-                mkdir -p $dest_dir &&
             #else:
                 #set create_ortho_sequences = False
+                #set create_corresponding_coding_sequences = False
             #end if
 
             GeneFamilyClassifier