view test-data/proteins.blastp.22Gv1.1.bestOrthos.summary @ 132:169504db8e43 draft

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date Fri, 07 Apr 2017 08:38:49 -0400
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Gene ID	Orthogroup ID	Arabidopsis thaliana	Thellungiella parvula	Carica papaya	Theobroma cacao	Populus trichocarpa	Fragaria vesca	Glycine max	Medicago truncatula	Vitis vinifera	Solanum lycopersicum	Solanum tuberosum	Mimulus guttatus	Nelumbo nucifera	Aquilegia coerulea	Oryza sativa	Brachypodium distachyon	Sorghum bicolor	Musa acuminata	Phoenix dactylifera	Amborella trichopoda	Selaginella moellendorffii	Physcomitrella patens	SuperOthogroup I1.2	SuperOthogroup I1.5	SuperOthogroup I1.8	SuperOthogroup I2.0	SuperOthogroup I2.5	SuperOthogroup I3.0	SuperOthogroup I3.5	SuperOthogroup I4.0	SuperOthogroup I4.5	SuperOthogroup I5.0	AHRD Descriptions	TAIR Gene(s) Descriptions	Pfam Domains	InterProScan Descriptions	GO Molecular Functions	GO Biological Processes	GO Cellular Components
contig_3	554	4	4	3	3	8	3	9	2	3	6	8	4	5	3	4	4	5	6	5	3	1	4	53	40	37	35	3078	3326	3484	3611	3699	3800	P-loop containing nucleoside triphosphate hydrolases superfamily protein [0.557] | Kinesin-related protein 13 [0.423] | kinesin 4 [0.010] | kinesin 5 [0.010]	P-loop containing nucleoside triphosphate hydrolases superfamily protein | ATP binding microtubule motor family protein	Kinesin (PF00225) [0.979]	Kinesin, motor domain (IPR001752) [0.979]	ATP binding (GO:0005524) [0.979] | microtubule binding (GO:0008017) [0.979] | microtubule motor activity (GO:0003777) [0.979]	microtubule-based movement (GO:0007018) [0.979]	NULL / Representative annotation below 0.1%
contig_1	5235	1	1	1	1	1	1	6	1	1	1	3	1	1	1	2	1	1	2	1	1	1	1	2	207	198	330	347	338	461	452	558	557	Protein kinase superfamily protein [1.000]	Protein kinase superfamily protein	ABC1 (PF03109) [0.968] | APH (PF01636) [0.161]	UbiB domain (IPR004147) [0.968] | Aminoglycoside phosphotransferase (IPR002575) [0.161]	NULL / Representative annotation below 0.1%	NULL / Representative annotation below 0.1%	NULL / Representative annotation below 0.1%
contig_2	38889	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	489	741	746	752	773	800	798	1128	1403	1407	6-phosphogluconolactonase 5 [0.500] | 6-phosphogluconolactonase 2 [0.500]	Unkown protein(s) / No TAIR description(s)	Glucosamine_iso (PF01182) [1.000]	Glucosamine/galactosamine-6-phosphate isomerase (IPR006148) [1.000]	NULL / Representative annotation below 0.1%	carbohydrate metabolic process (GO:0005975) [1.000]	NULL / Representative annotation below 0.1%
contig_9	20	3	35	0	3	15	7	16	70	0	25	5	1	0	339	4	9	44	0	0	0	3	2	2	21	26	25	23	30	28	29	29	29	ATP-dependent DNA helicase PIF1 [0.435] | PIF1 helicase [0.138] | ATP-dependent DNA helicase pif1 [0.138] | ATP-dependent DNA helicase RRM3 [0.014] | ATP-dependent DNA helicase PIF4 [0.014] | F-box/RNI-like/FBD-like domains-containing protein [0.003] | ATP-dependent DNA helicase pfh1 [0.002] | Protein kinase superfamily protein [0.002] | Nucleic acid-binding, OB-fold-like protein [0.002] | Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit [0.002] | ATP-dependent DNA helicase PIF2 [0.002]	PIF1 helicase	PIF1 (PF05970) [0.771] | Helitron_like_N (PF14214) [0.503] | Herpes_Helicase (PF02689) [0.349] | Rep_fac-A_C (PF08646) [0.009] | DUF223 (PF02721) [0.009] | ABC1 (PF03109) [0.003] | Phage_GPA (PF05840) [0.002] | AAA_30 (PF13604) [0.002]	DNA helicase Pif1 like (IPR010285) [0.771] | Helitron helicase-like domain (IPR025476) [0.503] | DNA helicase (IPR003840) [0.349] | Replication factor A, C-terminal (IPR013955) [0.009] | Domain of unknown function DUF223 (IPR003871) [0.009] | UbiB domain (IPR004147) [0.003] | Replication gene A protein (IPR008766) [0.002]	DNA helicase activity (GO:0003678) [0.771] | ATP binding (GO:0005524) [0.349] | helicase activity (GO:0004386) [0.349]	telomere maintenance (GO:0000723) [0.771] | DNA repair (GO:0006281) [0.771] | DNA replication (GO:0006260) [0.002]	NULL / Representative annotation below 0.1%