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view test-data/proteins.blastp.22Gv1.1.bestOrthos.summary @ 132:169504db8e43 draft
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author | greg |
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date | Fri, 07 Apr 2017 08:38:49 -0400 |
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Gene ID Orthogroup ID Arabidopsis thaliana Thellungiella parvula Carica papaya Theobroma cacao Populus trichocarpa Fragaria vesca Glycine max Medicago truncatula Vitis vinifera Solanum lycopersicum Solanum tuberosum Mimulus guttatus Nelumbo nucifera Aquilegia coerulea Oryza sativa Brachypodium distachyon Sorghum bicolor Musa acuminata Phoenix dactylifera Amborella trichopoda Selaginella moellendorffii Physcomitrella patens SuperOthogroup I1.2 SuperOthogroup I1.5 SuperOthogroup I1.8 SuperOthogroup I2.0 SuperOthogroup I2.5 SuperOthogroup I3.0 SuperOthogroup I3.5 SuperOthogroup I4.0 SuperOthogroup I4.5 SuperOthogroup I5.0 AHRD Descriptions TAIR Gene(s) Descriptions Pfam Domains InterProScan Descriptions GO Molecular Functions GO Biological Processes GO Cellular Components contig_3 554 4 4 3 3 8 3 9 2 3 6 8 4 5 3 4 4 5 6 5 3 1 4 53 40 37 35 3078 3326 3484 3611 3699 3800 P-loop containing nucleoside triphosphate hydrolases superfamily protein [0.557] | Kinesin-related protein 13 [0.423] | kinesin 4 [0.010] | kinesin 5 [0.010] P-loop containing nucleoside triphosphate hydrolases superfamily protein | ATP binding microtubule motor family protein Kinesin (PF00225) [0.979] Kinesin, motor domain (IPR001752) [0.979] ATP binding (GO:0005524) [0.979] | microtubule binding (GO:0008017) [0.979] | microtubule motor activity (GO:0003777) [0.979] microtubule-based movement (GO:0007018) [0.979] NULL / Representative annotation below 0.1% contig_1 5235 1 1 1 1 1 1 6 1 1 1 3 1 1 1 2 1 1 2 1 1 1 1 2 207 198 330 347 338 461 452 558 557 Protein kinase superfamily protein [1.000] Protein kinase superfamily protein ABC1 (PF03109) [0.968] | APH (PF01636) [0.161] UbiB domain (IPR004147) [0.968] | Aminoglycoside phosphotransferase (IPR002575) [0.161] NULL / Representative annotation below 0.1% NULL / Representative annotation below 0.1% NULL / Representative annotation below 0.1% contig_2 38889 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 489 741 746 752 773 800 798 1128 1403 1407 6-phosphogluconolactonase 5 [0.500] | 6-phosphogluconolactonase 2 [0.500] Unkown protein(s) / No TAIR description(s) Glucosamine_iso (PF01182) [1.000] Glucosamine/galactosamine-6-phosphate isomerase (IPR006148) [1.000] NULL / Representative annotation below 0.1% carbohydrate metabolic process (GO:0005975) [1.000] NULL / Representative annotation below 0.1% contig_9 20 3 35 0 3 15 7 16 70 0 25 5 1 0 339 4 9 44 0 0 0 3 2 2 21 26 25 23 30 28 29 29 29 ATP-dependent DNA helicase PIF1 [0.435] | PIF1 helicase [0.138] | ATP-dependent DNA helicase pif1 [0.138] | ATP-dependent DNA helicase RRM3 [0.014] | ATP-dependent DNA helicase PIF4 [0.014] | F-box/RNI-like/FBD-like domains-containing protein [0.003] | ATP-dependent DNA helicase pfh1 [0.002] | Protein kinase superfamily protein [0.002] | Nucleic acid-binding, OB-fold-like protein [0.002] | Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit [0.002] | ATP-dependent DNA helicase PIF2 [0.002] PIF1 helicase PIF1 (PF05970) [0.771] | Helitron_like_N (PF14214) [0.503] | Herpes_Helicase (PF02689) [0.349] | Rep_fac-A_C (PF08646) [0.009] | DUF223 (PF02721) [0.009] | ABC1 (PF03109) [0.003] | Phage_GPA (PF05840) [0.002] | AAA_30 (PF13604) [0.002] DNA helicase Pif1 like (IPR010285) [0.771] | Helitron helicase-like domain (IPR025476) [0.503] | DNA helicase (IPR003840) [0.349] | Replication factor A, C-terminal (IPR013955) [0.009] | Domain of unknown function DUF223 (IPR003871) [0.009] | UbiB domain (IPR004147) [0.003] | Replication gene A protein (IPR008766) [0.002] DNA helicase activity (GO:0003678) [0.771] | ATP binding (GO:0005524) [0.349] | helicase activity (GO:0004386) [0.349] telomere maintenance (GO:0000723) [0.771] | DNA repair (GO:0006281) [0.771] | DNA replication (GO:0006260) [0.002] NULL / Representative annotation below 0.1%