Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 72:e8a8650c7165 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Fri, 17 Feb 2017 13:05:55 -0500
parents c443ffe51d49
children 6e859426c873
comparison
equal deleted inserted replaced
71:c443ffe51d49 72:e8a8650c7165
82 #if $single_copy_orthogroup: 82 #if $single_copy_orthogroup:
83 #if str($single_copy) == 'custom': 83 #if str($single_copy) == 'custom':
84 #set single_copy_custom_cond = $single_copy_cond.single_copy_custom_cond 84 #set single_copy_custom_cond = $single_copy_cond.single_copy_custom_cond
85 #set single_copy_custom = $single_copy_custom_cond.single_copy_custom 85 #set single_copy_custom = $single_copy_custom_cond.single_copy_custom
86 #if str($single_copy_custom) == 'no': 86 #if str($single_copy_custom) == 'no':
87 #set single_copy_custom_config = $os.path.join($scaffold.fields.path, 'singleCopy.config') 87 --single_copy_custom 'default'
88 --single_copy_custom '$single_copy_custom_config'
89 #else: 88 #else:
90 --single_copy_custom '$single_copy_custom_cond.single_copy_custom_config' 89 --single_copy_custom '$single_copy_custom_cond.single_copy_custom_config'
91 #end if 90 #end if
92 #else: 91 #else:
93 --single_copy_taxa $single_copy_cond.single_copy_taxa 92 --single_copy_taxa $single_copy_cond.single_copy_taxa