Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 126:c840726bd580 draft

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Uploaded
author greg
date Tue, 21 Mar 2017 11:08:38 -0400
parents 1d3d50fbf3ca
children 72341ff03a15
comparison
equal deleted inserted replaced
125:1d3d50fbf3ca 126:c840726bd580
71 --single_copy_custom 'default' 71 --single_copy_custom 'default'
72 #else: 72 #else:
73 --single_copy_custom '$single_copy_custom_cond.single_copy_custom_config' 73 --single_copy_custom '$single_copy_custom_cond.single_copy_custom_config'
74 #end if 74 #end if
75 #else: 75 #else:
76 --single_copy_taxa $single_copy_cond.single_copy_taxa 76 #if str($single_copy_cond.single_copy_taxa) != '':
77 --taxa_present $single_copy_cond.taxa_present 77 --single_copy_taxa $single_copy_cond.single_copy_taxa
78 #end if
79 #if str($single_copy_cond.taxa_present) != '':
80 --taxa_present $single_copy_cond.taxa_present
81 #end if
78 #end if 82 #end if
79 #end if 83 #end if
80 #if $create_ortho_sequences: 84 #if $create_ortho_sequences:
81 --orthogroup_fasta "true" 85 --orthogroup_fasta "true"
82 #if $create_corresponding_coding_sequences: 86 #if $create_corresponding_coding_sequences:
179 <param name="single_copy_custom_config" format="txt" type="data" label="Custom selection file"/> 183 <param name="single_copy_custom_config" format="txt" type="data" label="Custom selection file"/>
180 </when> 184 </when>
181 </conditional> 185 </conditional>
182 </when> 186 </when>
183 <when value="taxa"> 187 <when value="taxa">
184 <param name="single_copy_taxa" type="integer" label="Minimum single copy taxa"/> 188 <param name="single_copy_taxa" type="integer" optional="true" label="Minimum single copy taxa"/>
185 <param name="taxa_present" type="integer" label="Minimum taxa present"/> 189 <param name="taxa_present" type="integer" optional="true" label="Minimum taxa present"/>
186 </when> 190 </when>
187 </conditional> 191 </conditional>
188 </when> 192 </when>
189 </conditional> 193 </conditional>
190 <conditional name="create_orthogroup_cond"> 194 <conditional name="create_orthogroup_cond">