Mercurial > repos > greg > gene_family_classifier

comparison gene_family_classifier.xml @ 19:c4a9c23334a4 draft

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author greg
date Tue, 10 Jan 2017 09:53:25 -0500
parents b14a129fe55f
children 038777896b71
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18:b14a129fe55f 19:c4a9c23334a4
46 --coding_sequences "$create_corresponding_coding_sequences_cond.coding_sequences" 46 --coding_sequences "$create_corresponding_coding_sequences_cond.coding_sequences"
47 #end if 47 #end if
48 #end if 48 #end if
49 #end if 49 #end if
50 --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds" 50 --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds"
51 --num_threads \${GALAXY_SLOTS:-4} 51 --num_threads "\${GALAXY_SLOTS:-4}"
52 #if str($save_hmmscan_log_cond.classifier) == 'hmmscan' or str($save_hmmscan_log_cond.classifier) == 'both': 52 #if str($save_hmmscan_log_cond.classifier) == 'hmmscan' or str($save_hmmscan_log_cond.classifier) == 'both':
53 #if str($save_hmmscan_log_cond.save_hmmscan_log) == 'yes': 53 #if str($save_hmmscan_log_cond.save_hmmscan_log) == 'yes':
54 && mv geneFamilyClassification_dir/hmmscan.log $hmmscan_log 54 && mv geneFamilyClassification_dir/hmmscan.log $hmmscan_log
55 #else: 55 #else:
56 && rm geneFamilyClassification_dir/hmmscan.log 56 && rm geneFamilyClassification_dir/hmmscan.log